Package picard.analysis
Interface WgsMetricsProcessor
- All Known Implementing Classes:
WgsMetricsProcessorImpl
public interface WgsMetricsProcessor
Interface for processing data and generate result for CollectWgsMetrics
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Method Summary
Modifier and TypeMethodDescriptionvoid
addToMetricsFile
(htsjdk.samtools.metrics.MetricsFile<WgsMetrics, Integer> file, boolean includeBQHistogram, CountingFilter dupeFilter, CountingFilter adapterFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter) Adds result metric's data to input filevoid
Method processes the input data and accumulates result data
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Method Details
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processFile
void processFile()Method processes the input data and accumulates result data -
addToMetricsFile
void addToMetricsFile(htsjdk.samtools.metrics.MetricsFile<WgsMetrics, Integer> file, boolean includeBQHistogram, CountingFilter dupeFilter, CountingFilter adapterFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter) Adds result metric's data to input file- Parameters:
file
- MetricsFile for result of collector's workincludeBQHistogram
- include base quality histogramdupeFilter
- counting filter for duplicate readsadapterFilter
- counting filter for adapter readsmapqFilter
- counting filter for mapping qualitypairFilter
- counting filter for reads without a mapped mate pair
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