Package picard.vcf.filter
Interface VariantFilter
- All Known Implementing Classes:
AlleleBalanceFilter
,FisherStrandFilter
,QdFilter
public interface VariantFilter
Interface for classes that can generate filters for VariantContexts. The contract is that a
VariantContext is provided, and if the variant should be filtered out then the filter string
should be returned, otherwise null.
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Method Summary
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Method Details
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filter
Check to see if the VariantContext should have a filter applied to it. If so return the filter string, otherwise return null. -
headerLines
List<htsjdk.variant.vcf.VCFFilterHeaderLine> headerLines()Return VCF header lines that define filters that may be applied by the VariantFilter.
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