Package picard.arrays.illumina
Class IlluminaBPMFile
java.lang.Object
picard.arrays.illumina.InfiniumDataFile
picard.arrays.illumina.IlluminaBPMFile
- All Implemented Interfaces:
AutoCloseable
A class to parse the contents of an Illumina Bead Pool Manifest (BPM) file
A BPM file contains metadata (including the alleles, mapping and normalization information) on an Illumina Genotyping Array
Each type of genotyping array has a specific BPM .
-
Field Summary
Fields inherited from class picard.arrays.illumina.InfiniumDataFile
MAX_UNSIGNED_SHORT
-
Constructor Summary
Constructors -
Method Summary
Methods inherited from class picard.arrays.illumina.InfiniumDataFile
byteArrayToCharArray, byteArrayToFloat, byteArrayToInt, floatToByteArray, getIdentifier, setIdentifier, shortToByteArray
-
Constructor Details
-
IlluminaBPMFile
- Throws:
IOException
-
-
Method Details
-
close
- Specified by:
close
in interfaceAutoCloseable
- Throws:
IOException
-
getManifestName
-
getControlConfig
-
getLocusEntries
-
getAllNormalizationIds
public int[] getAllNormalizationIds() -
getUniqueNormalizationIds
-