Package picard.analysis
Class RrbsCpgDetailMetrics
java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.metrics.MultilevelMetrics
picard.analysis.RrbsCpgDetailMetrics
@DocumentedFeature(groupName="Metrics",
summary="Metrics")
public final class RrbsCpgDetailMetrics
extends MultilevelMetrics
Holds information about CpG sites encountered for RRBS processing QC
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Field Summary
FieldsModifier and TypeFieldDescriptionNumber of times this CpG site was converted (TG for + strand, CA for - strand)CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)Position within the sequence of the CpG siteSequence the CpG is seen inNumber of times this CpG site was encounteredFields inherited from class picard.metrics.MultilevelMetrics
LIBRARY, READ_GROUP, SAMPLE
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class htsjdk.samtools.metrics.MetricBase
equals, hashCode, toString
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Field Details
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SEQUENCE_NAME
Sequence the CpG is seen in -
POSITION
Position within the sequence of the CpG site -
TOTAL_SITES
Number of times this CpG site was encountered -
CONVERTED_SITES
Number of times this CpG site was converted (TG for + strand, CA for - strand) -
PCT_CONVERTED
CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)
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Constructor Details
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RrbsCpgDetailMetrics
public RrbsCpgDetailMetrics()
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