Class CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage

java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.analysis.MergeableMetricBase
picard.analysis.WgsMetrics
picard.analysis.CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage
Enclosing class:
CollectWgsMetricsWithNonZeroCoverage

@DocumentedFeature(groupName="Metrics", summary="Metrics") public static class CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage extends WgsMetrics
Metrics for evaluating the performance of whole genome sequencing experiments.
  • Field Details

  • Constructor Details

    • WgsMetricsWithNonZeroCoverage

      public WgsMetricsWithNonZeroCoverage()
    • WgsMetricsWithNonZeroCoverage

      public WgsMetricsWithNonZeroCoverage(htsjdk.samtools.util.IntervalList intervals, htsjdk.samtools.util.Histogram<Integer> highQualityDepthHistogram, htsjdk.samtools.util.Histogram<Integer> unfilteredDepthHistogram, double pctExcludedByAdapter, double pctExcludedByMapq, double pctExcludedByDupes, double pctExcludedByPairing, double pctExcludedByBaseq, double pctExcludedByOverlap, double pctExcludedByCapping, double pctTotal, int coverageCap, htsjdk.samtools.util.Histogram<Integer> unfilteredBaseQHistogram, int sampleSize)