# STOCKHOLM 1.0
#=GF ID   COX2_TM
#=GF AC   PF02790.17
#=GF DE   Cytochrome C oxidase subunit II, transmembrane domain
#=GF AU   Sonnhammer ELL;0000-0002-9015-5588
#=GF AU   Griffiths-Jones SR;0000-0001-6043-807X
#=GF SE   Prosite
#=GF GA   22.80 18.00;
#=GF TC   22.80 21.40;
#=GF NC   22.70 17.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Cytochrome_c_oxidase_subunit_II
#=GF RN   [1]
#=GF RM   8638158
#=GF RT   The whole structure of the 13-subunit oxidized cytochrome c
#=GF RT   oxidase at 2.8 A. 
#=GF RA   Tsukihara T, Aoyama H, Yamashita E, Tomizaki T, Yamaguchi H,
#=GF RA   Shinzawa-Itoh K, Nakashima R, Yaono R, Yoshikawa S; 
#=GF RL   Science 1996;272:1136-1144.
#=GF DR   INTERPRO; IPR011759;
#=GF DR   PROSITE; PDOC00075;
#=GF DR   SCOP; 1occ; fa;
#=GF DC   This family corresponds to chains b and o.
#=GF DR   TC; 3.D.4;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The N-terminal domain of cytochrome C oxidase contains two
#=GF CC   transmembrane alpha-helices.
#=GF SQ   11
#=GS COX2_SCHPO/11-99     AC P21534.4
#=GS COX2_CANGA/17-103    AC P43373.2
#=GS COX2_NEUCR/14-102    AC P00411.2
#=GS H9D0Q0_EMENI/15-102  AC H9D0Q0.1
#=GS COX2_ARATH/17-103    AC P93285.2
#=GS COX2_ANOGA/1-83      AC P34840.1
#=GS COX2_CHICK/1-82      AC P18944.1
#=GS COX2_SHEEP/1-83      AC O78750.1
#=GS COX2_STRPU/1-83      AC P15545.1
#=GS COX2_SYNY3/19-111    AC Q06474.2
#=GS A1BA41_PARDP/42-128  AC A1BA41.1
COX2_SCHPO/11-99                APSSWALY...FQDGASPSYLGVTHLNDYLMFYLTFIFIGVIYAICKAVIEYNYNSHPIAAKYTTHGSI.VEFIWTLIPALILILVALPSFKL
COX2_CANGA/17-103               VPTPYGIY...FQDSATPNQEGILELHDNIMFYLFIILGLVSWMLFTIVKTY..SKNPMAYKYIKHGQT.IEIIWTMFPAVILLIIAFPSFIL
COX2_NEUCR/14-102               APSPWGIY...FQDSATPQMEGLVELHDNIMYYLVVILFGVGWILLSIIRNYISTKSPISHKYLNHGTL.IELIWTITPAVILILIAFPSFKL
H9D0Q0_EMENI/15-102             .PTPWGIF...FQDSASPQMEGIEELHNNIMFYLAIILFTVTWMMITIIRNFVAKKSPIAHKYMNHGTL.IELIWTITPAFILILIAFPSFKL
COX2_ARATH/17-103               .AEPWQLG...FQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRALWHFHYKKNAIPQR.IVHGTT.IEILWTIFPSIILMFIAIPSFAL
COX2_ANOGA/1-83                 MATWANLG...LQDSSSPLMEQLNFFHDHTLLILTMITILVGYIMGMLSFN......KFTNRFLLHGQT.IEIIWTVLPAIILMFIAFPSLRL
COX2_CHICK/1-82                 MANHSQLG...FQDASSPIMEELVEFHDHALMVALAICSLVLYLLTLMLME......KLS.SNTVDAQE.VELIWTILPAIVLVLLALPSLQI
COX2_SHEEP/1-83                 MAYPMQLG...FQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTT......KLTHTSTMDAQE.VETIWTILPAIILIMIALPSLRI
COX2_STRPU/1-83                 MGTWAQFG...LQDASSPLMEELTYFHDYALIVLTLITILVFYGLVSLLVS......SNTNRFFFEGQE.LETIWTVIPALILILIALPSLQL
COX2_SYNY3/19-111               VSLWYGQNHGLMPVAASADAEKVDGIFNYMMTIATGLFLLVEGVLVYCLIRFRRRKDDQTDGPPIEGNVPLEILWTAIPTVIVFTLAVYSFEV
A1BA41_PARDP/42-128             .PVNGGMN...FQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPAR.FTHNTP.IEVIWTLVPVLILVAIGAFSLPI
#=GC seq_cons                   hssshsls...FQDuuSP.MEtlhclHDahhhhLshIhhhVhalLshhlhpa..ptpslsp+.hhHGph.lElIWTllPAlILlhIAhPShpL
//
