#!/bin/bash
set -e

pkg=yanagiba

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

yanagiba -i data.fastq.gz --tailtrim 1000 > output
if [ $(dpkg-architecture -qDEB_BUILD_ARCH) = "amd64" ]
then
  echo "1f7ec3fe800b8648feae33808a65178b  output" >> checksums
  md5sum --check checksums
else
  [ -s "output" ] && echo "PASS Test"
fi