libpappsomspp
Library for mass spectrometry
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pappso::specglob::SpectralAlignment Member List

This is the complete list of members for pappso::specglob::SpectralAlignment, including all inherited members.

align(PeptideSpectraCsp peptide_spectrum, ExperimentalSpectrumCsp experimental_spectrum)pappso::specglob::SpectralAlignment
backTrack() constpappso::specglob::SpectralAlignment
buildPeptideModel() constpappso::specglob::SpectralAlignment
fillMassDelta(const PeptideSpectrum &peptide_spectrum, const ExperimentalSpectrum &experimental_spectrum)pappso::specglob::SpectralAlignmentprivate
fillMatricesWithScores(const boost::numeric::ublas::matrix< SpectralAlignmentDataPoint >::iterator2 &it_pos, const PeptideSpectrum &peptide_spectrum, const ExperimentalSpectrum &experimental_spectrum)pappso::specglob::SpectralAlignmentprivate
getBestRealignScore(const boost::numeric::ublas::matrix< SpectralAlignmentDataPoint >::iterator2 &it_pos, std::size_t expeIndicesK, int reAlignScore, int alignScoreToAdd)pappso::specglob::SpectralAlignmentprivate
getExperimentalSpectrumCsp() constpappso::specglob::SpectralAlignment
getExperimentalSpectrumDataPoint(const boost::numeric::ublas::matrix< SpectralAlignmentDataPoint >::iterator2 &itpos) constpappso::specglob::SpectralAlignmentprivate
getMatrix() constpappso::specglob::SpectralAlignment
getMaxPosIterator() constpappso::specglob::SpectralAlignment
getMaxScore() constpappso::specglob::SpectralAlignment
getPeptideSpectraCsp() constpappso::specglob::SpectralAlignment
getPrecursorMzDelta() constpappso::specglob::SpectralAlignment
getScoreRow(std::size_t row_indice) constpappso::specglob::SpectralAlignment
m_BETTER_END_RApappso::specglob::SpectralAlignmentprivate
m_itPosMaxpappso::specglob::SpectralAlignmentprivate
m_matrixpappso::specglob::SpectralAlignmentprivate
m_maxScorepappso::specglob::SpectralAlignmentprivate
m_precisionPtrpappso::specglob::SpectralAlignmentprivate
m_precursorMassDeltapappso::specglob::SpectralAlignmentprivate
m_scoreValuespappso::specglob::SpectralAlignmentprivate
mcsp_experimentalSpectrumpappso::specglob::SpectralAlignmentprivate
mcsp_peptideSpectrumpappso::specglob::SpectralAlignmentprivate
SpectralAlignment(ScoreValues score_values, pappso::PrecisionPtr precision_ptr)pappso::specglob::SpectralAlignment
~SpectralAlignment()pappso::specglob::SpectralAlignment