libpappsomspp
Library for mass spectrometry
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wraptandemresults.h
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1/**
2 * \file pappsomspp/processing/tandemwrapper/wraptandemresults.h
3 * \date 13/11/2021
4 * \author Olivier Langella
5 * \brief rewrites tandem xml output file with temporary files
6 */
7
8/*******************************************************************************
9 * Copyright (c) 2021 Olivier Langella <Olivier.Langella@u-psud.fr>.
10 *
11 * This file is part of PAPPSOms-tools.
12 *
13 * PAPPSOms-tools is free software: you can redistribute it and/or modify
14 * it under the terms of the GNU General Public License as published by
15 * the Free Software Foundation, either version 3 of the License, or
16 * (at your option) any later version.
17 *
18 * PAPPSOms-tools is distributed in the hope that it will be useful,
19 * but WITHOUT ANY WARRANTY; without even the implied warranty of
20 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 * GNU General Public License for more details.
22 *
23 * You should have received a copy of the GNU General Public License
24 * along with PAPPSOms-tools. If not, see <http://www.gnu.org/licenses/>.
25 *
26 ******************************************************************************/
27
28#pragma once
29
30#include <QDebug>
31#include <QFile>
32#include "../xml/xmlstreamreaderinterface.h"
33
34
35namespace pappso
36{
37
38
39/**
40 * @todo write docs
41 */
43{
44 public:
45 /**
46 * Default constructor
47 */
48 WrapTandemResults(const QString &final_tandem_output,
49 const QString &original_msdata_file_name);
50
51 /**
52 * Destructor
53 */
54 virtual ~WrapTandemResults();
55
56 void setInputParameters(const QString &label_name_attribute,
57 const QString &input_value);
58
59 protected:
60 virtual void readStream() override;
61
62 private:
63 void process_group_note();
64
65
66 private:
68 QXmlStreamWriter m_writerXmlTandemOutput;
70
71 std::map<QString, QString> m_mapTandemInputParameters;
72};
73} // namespace pappso
QXmlStreamWriter m_writerXmlTandemOutput
virtual void readStream() override
std::map< QString, QString > m_mapTandemInputParameters
void setInputParameters(const QString &label_name_attribute, const QString &input_value)
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39