Class MicroRnaBindingSite
java.lang.Object
org.snpeff.interval.Interval
org.snpeff.interval.Marker
org.snpeff.interval.MicroRnaBindingSite
- All Implemented Interfaces:
Serializable, Cloneable, Comparable<Interval>, TxtSerializable
miRna binding site (usually this was predicted by some algorithm)
- Author:
- pcingola
- See Also:
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Field Summary
Fields inherited from class Interval
chromosomeNameOri, end, id, parent, start, strandMinus -
Constructor Summary
ConstructorsConstructorDescriptionMicroRnaBindingSite(Marker parent, int start, int end, boolean strandMinus, String id, double pValue) -
Method Summary
Modifier and TypeMethodDescriptionPerform a shallow clonebooleanvariantEffect(Variant variant, VariantEffects changeEffects) Calculate the effect of this variantMethods inherited from class Marker
adjust, apply, applyDel, applyDup, applyIns, applyMixed, clone, codonTable, compareTo, compareToPos, distance, distanceBases, getParent, getType, idChain, idChain, idChain, includes, intersect, isAdjustIfParentDoesNotInclude, isDeferredAnalysis, isShowWarningIfParentDoesNotInclude, minus, query, query, readTxt, serializeParse, serializeSave, shouldApply, toString, union, variantEffectNonRefMethods inherited from class Interval
equals, findParent, getChromosome, getChromosomeName, getChromosomeNameOri, getChromosomeNum, getEnd, getGenome, getGenomeName, getId, getStart, getStrand, hashCode, intersects, intersects, intersects, intersects, intersectSize, isCircular, isSameChromo, isStrandMinus, isStrandPlus, isValid, setChromosomeNameOri, setEnd, setId, setParent, setStart, setStrandMinus, shiftCoordinates, size, toStr, toStringAsciiArt, toStrPos
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Constructor Details
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MicroRnaBindingSite
public MicroRnaBindingSite() -
MicroRnaBindingSite
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Method Details
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cloneShallow
Description copied from class:MarkerPerform a shallow clone- Overrides:
cloneShallowin classMarker
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variantEffect
Description copied from class:MarkerCalculate the effect of this variant- Overrides:
variantEffectin classMarker
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