mtx2bin.cpp File Reference
Example programs and code

C++ example based on <rsb.hpp> converting a Matrix Market file into a custom format using RsbMatrix.get_coo(). More...

## Functions

template<typename T >
size_t | vecdump (std::ofstream &ofs, const std::vector< T > &v)
template<typename IT , typename NT >
size_t | coodump (std::ofstream &ofs, std::vector< IT > &ia, const std::vector< IT > &ja, const std::vector< NT > &va)
template<typename IT , typename NT >
size_t | mtxdump (std::ofstream &ofs, const std::string &hdr, std::vector< IT > &ia, const std::vector< IT > &ja, const std::vector< NT > &va)
template<typename IT , typename NT >
size_t | mtxdump (std::ofstream &ofs, IT m, IT k, IT nnz, rsb_flags_t flagsA, std::vector< IT > &ia, const std::vector< IT > &ja, const std::vector< NT > &va)
template<typename nt_t >
void | mtx2bin (const std::string ifilename, const std::string ofilename)
int | err_msg (const std::string argv0)
auto | main (const int argc, char *argv[]) -> int

## Variables

const char | dtypechar {'S'}

## Detailed Description

C++ example based on <rsb.hpp> converting a Matrix Market file into a custom format using RsbMatrix.get_coo().

Author
  Michele Martone

/*
Copyright (C) 2021-2022 Michele Martone
This file is part of librsb.
librsb is free software; you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License as published
by the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.
librsb is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
License for more details.
You should have received a copy of the GNU Lesser General Public
License along with librsb; see the file COPYING.
If not, see <http://www.gnu.org/licenses/>.
*/
/*!
\ingroup rsb_doc_examples
@file
@author Michele Martone
@brief C++ example based on <rsb.hpp> converting a Matrix Market file into a custom format using RsbMatrix.get_coo().
\include mtx2bin.cpp
*/
#if defined(HAVE_CONFIG_H)
#include "config.h"
#endif
#include <fstream>
#include <cstdlib> // EXIT_FAILURE
#include <complex>
#include <array>
#include <vector>
#include <iomanip>
#include <iostream>
#if HAVE_FILESYSTEM
#include <filesystem>
#endif
#include <string>
#include <rsb.hpp>
using namespace ::rsb;
template <typename T>
size_t vecdump(std::ofstream & ofs, const std::vector<T> & v) {
const size_t wb {v.size()*sizeof(T)};
ofs.write( reinterpret_cast<const char*>(v.data()), wb);
return wb;
}
template <typename IT, typename NT>
size_t coodump(std::ofstream & ofs, std::vector<IT> & ia, const std::vector<IT> & ja, const std::vector<NT> & va) {
size_t wb { 0 };
wb += vecdump(ofs, ia);
wb += vecdump(ofs, ja);
wb += vecdump(ofs, va);
return wb;
}
template <typename IT, typename NT>
size_t mtxdump(std::ofstream & ofs, const std::string & hdr, std::vector<IT> & ia, const std::vector<IT> & ja, const std::vector<NT> & va) {
size_t wb { 0 };
ofs << hdr;
wb = hdr.size() + coodump(ofs, ia, ja, va);
return wb;
}
template <typename IT, typename NT>
size_t mtxdump(std::ofstream & ofs, IT m, IT k, IT nnz, rsb_flags_t flagsA, std::vector<IT> & ia, const std::vector<IT> & ja, const std::vector<NT> & va) {
const std::string rsb_bin_tag { "BINARY LIBRSB MATRIX MARKET EXTENSION COO FORMAT" };
const char rsb_bin_cookie { '\0' };
const std::string typstr{ std::is_scalar<NT>() ? "real" : "complex" };
const std::string symstr{ ( flagsA & RSB_FLAG_SYMMETRIC ) ? "symmetric" : ( (flagsA & RSB_FLAG_HERMITIAN) ? "hermitian" : "general" ) };
std::ostringstream oss;
oss << "%%MatrixMarket matrix coordinate " << typstr << " " << symstr << "\n";
oss << m << " " << k << " " << nnz << "\n";
oss << rsb_bin_tag << "\n";
oss << rsb_internal::rsb_type_t_for<NT>() << rsb_bin_cookie;
auto hdr { oss.str() };
return mtxdump(ofs, hdr, ia, ja, va);
}
template <typename nt_t>
void mtx2bin(const std::string ifilename, const std::string ofilename) {
RsbLib rsblib;
RsbMatrix<nt_t> mtx(ifilename.c_str());
const rsb_trans_t transA = RSB_TRANSPOSITION_N;
std::vector<nt_t> VA(mtx.nnz());
std::vector<rsb_coo_idx_t> IA(mtx.nnz());
std::vector<rsb_coo_idx_t> JA(mtx.nnz());
mtx.get_coo(transA,VA.data(),IA.data(),JA.data(),RSB_FLAG_FORTRAN_INDICES_INTERFACE);
auto ofs = std::ofstream(ofilename,std::ios::binary);
mtxdump(ofs, mtx.rows(), mtx.cols(), mtx.nnz(), mtx.rsbflags(), IA, JA, VA);
}
#ifdef RSB_NUMERICAL_TYPE_PREPROCESSOR_SYMBOLS
const char dtypechar {RSB_NUMERICAL_TYPE_PREPROCESSOR_SYMBOLS[0]};
#else
const char dtypechar {'S'};
#endif
int err_msg(const std::string argv0) {
std::cout << "usage: " << argv0 << " matrix-input-file [matrix-output-file [type]]" << std::endl;
#if defined(RSB_BLAS_NUMERICAL_TYPE_PREPROCESSOR_SYMBOLS)
std::cout << "with [type] among " << RSB_BLAS_NUMERICAL_TYPE_PREPROCESSOR_SYMBOLS << " ; default " << dtypechar << std::endl;
#endif
return EXIT_FAILURE;
}
auto main(const int argc, char * argv[]) -> int
{
const std::string ifilename{ argc > 1 ? argv[1] : "../A.mtx"};
const std::string ofilename{ argc > 2 ? argv[2] : ifilename + ".bin"};
const char typechar = toupper( argc > 3 ? *argv[3] : dtypechar );
#if defined(HAVE_FILESYSTEM) && (__cplusplus >= 201703)
if ( std::filesystem::exists(ifilename) )
#else
if( std::ifstream(ifilename) )
#endif
switch (typechar)
{
case 'D': mtx2bin<double>(ifilename,ofilename); break;
case 'S': mtx2bin<float>(ifilename,ofilename); break;
case 'C': mtx2bin<std::complex<float>>(ifilename,ofilename); break;
case 'Z': mtx2bin<std::complex<double>>(ifilename,ofilename); break;
default:
return err_msg(argv[0]);
}
else
{
return err_msg(argv[0]);
}
}
main
auto main() -> int
Definition assemble.cpp:38
bench
void bench(const std::string filename, rsb_flags_t order)
Definition autotune.cpp:42
RsbLib
Class initializing/finalizing librsb state.
Definition rsb.hpp:272
RsbMatrix
Represent a sparse matrix in RSB format by means of librsb.
Definition rsb.hpp:532
coodump
size_t coodump(std::ofstream &ofs, std::vector< IT > &ia, const std::vector< IT > &ja, const std::vector< NT > &va)
Definition mtx2bin.cpp:57
vecdump
size_t vecdump(std::ofstream &ofs, const std::vector< T > &v)
Definition mtx2bin.cpp:50
mtxdump
size_t mtxdump(std::ofstream &ofs, const std::string &hdr, std::vector< IT > &ia, const std::vector< IT > &ja, const std::vector< NT > &va)
Definition mtx2bin.cpp:66
dtypechar
const char dtypechar
Definition mtx2bin.cpp:107
mtx2bin
void mtx2bin(const std::string ifilename, const std::string ofilename)
Definition mtx2bin.cpp:89
err_msg
int err_msg(const std::string argv0)
Definition mtx2bin.cpp:110
rsb
Definition rsb.F90:11
RSB_FLAG_SYMMETRIC
#define RSB_FLAG_SYMMETRIC
Definition rsb.h:554
rsb_trans_t
rsb_flags_t rsb_trans_t
Definition rsb.h:400
rsb_flags_t
signed int rsb_flags_t
Definition rsb.h:373
RSB_FLAG_FORTRAN_INDICES_INTERFACE
#define RSB_FLAG_FORTRAN_INDICES_INTERFACE
Definition rsb.h:484
RSB_FLAG_HERMITIAN
#define RSB_FLAG_HERMITIAN
Definition rsb.h:557
rsb.hpp
Classes RsbLib and RsbMatrix provide native C++ access to librsb.
RSB_TRANSPOSITION_N
#define RSB_TRANSPOSITION_N
N: Non transposed flag, valid for rsb_trans_t typed variables.
Definition rsb_types.h:138

## Function Documentation

## coodump()

template<typename IT , typename NT >

size_t coodump | ( | std::ofstream & | ofs,
|  | std::vector< IT > & | ia,
|  | const std::vector< IT > & | ja,
|  | const std::vector< NT > & | va
| ) |  |

## err_msg()

int err_msg | ( | const std::string | argv0 | ) |

## main()

auto main | ( | const int | argc,
|  | char * | argv[]
| ) |  | -> int

## mtx2bin()

template<typename nt_t >

void mtx2bin | ( | const std::string | ifilename,
|  | const std::string | ofilename
| ) |  |

## mtxdump() [1/2]

template<typename IT , typename NT >

size_t mtxdump | ( | std::ofstream & | ofs,
|  | const std::string & | hdr,
|  | std::vector< IT > & | ia,
|  | const std::vector< IT > & | ja,
|  | const std::vector< NT > & | va
| ) |  |

## mtxdump() [2/2]

template<typename IT , typename NT >

size_t mtxdump | ( | std::ofstream & | ofs,
|  | IT | m,
|  | IT | k,
|  | IT | nnz,
|  | rsb_flags_t | flagsA,
|  | std::vector< IT > & | ia,
|  | const std::vector< IT > & | ja,
|  | const std::vector< NT > & | va
| ) |  |

## vecdump()

template<typename T >

size_t vecdump | ( | std::ofstream & | ofs,
|  | const std::vector< T > & | v
| ) |  |

## Variable Documentation

## dtypechar

const char dtypechar {'S'}